Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs77652087 | chr14:59673348 | A/C | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs7766857 | chr6:46114914 | A/G | 5.61E-5 | 489 | 15.68 | 16.57 | 27.37 | KM Plot |
| THCA | rs77684743 | chr1:91760967 | T/C | 8.35E-6 | 487 | 15.63 | 17.03 | 17.77 | KM Plot |
| THCA | rs7770081 | chr6:133089569 | G/T | 6.36E-7 | 490 | 15.63 | 17.18 | 17.77 | KM Plot |
| THCA | rs77733631 | chr6:25336829 | T/C | 7.88E-15 | 485 | 15.13 | 25.38 | 16.72 | KM Plot |
| THCA | rs77744048 | chr2:48093472 | C/T | 4.85E-8 | 490 | 15.23 | 19.47 | 8.27 | KM Plot |
| THCA | rs77750586 | chr4:39454904 | C/A | 4.44E-15 | 489 | 15.9 | 16.38 | 6.1 | KM Plot |
| THCA | rs77773396 | chr14:59686936 | C/A | 0 | 487 | 15.9 | 16.4 | 3.53 | KM Plot |
| THCA | rs77783962 | chr14:59846441 | C/G | 0.000182 | 485 | 16.2 | 15 | 5.45 | KM Plot |
| THCA | rs7779988 | chr7:64285134 | T/C | 9.99E-16 | 490 | 16.37 | 14.13 | 17.32 | KM Plot |
| THCA | rs77803803 | chr2:216187135 | C/T | 5.28E-9 | 478 | 16.65 | 15.08 | 13.35 | KM Plot |
| THCA | rs77816447 | chr6:24433194 | C/T | 6.2E-7 | 479 | 16.33 | 14.9 | 9.25 | KM Plot |
| THCA | rs77818310 | chr6:24464026 | T/C | 0 | 477 | 16.48 | 14.77 | 8.88 | KM Plot |
| THCA | rs77827514 | chr10:104822009 | C/T | 5.02E-9 | 490 | 15.23 | 17.68 | 32.1 | KM Plot |
| THCA | rs77850476 | chr19:58280265 | C/T | 0.000139 | 468 | 16.08 | 15.9 | 17.93 | KM Plot |